Caffeic Acid

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Caffeic Acid

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3,4-Dihydroxycinnamic Acid

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Caffeic acid

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SMILES:O=C(O)C=CC1=CC(O)=C(O)C=C1

InChI:InChI=1S/C9H8O4/c10-7-3-1-6(5-8(7)11)2-4-9(12)13/h1-5,10-11H,(H,12,13)

InChI key:QAIPRVGONGVQAS-UHFFFAOYSA-N

Synonyms: caffeic acid, 3-(3,4-dihydroxyphenyl)acrylic acid, 2-Propenoic acid, 3-(3,4-dihydroxyphenyl)-, trans-caffeic acid, (E)-3-(3,4-dihydroxyphenyl)acrylic acid, trans-Caffeate, 3-(3,4-Dihydroxyphenyl)propenoic acid, Cinnamic acid, 3,4-dihydroxy-, 3,4-Dihydroxycinnamic acid, 4-(2-Carboxyethenyl)-1,2-dihydroxybenzene, UNII-U2S3A33KVM, 3,4-Dihydroxy-trans-cinnamate, (2E)-3-(3,4-dihydroxyphenyl)prop-2-enoic acid, 501-16-6,3,4-Dihydroxycinnamic acid, 3-(3,4-Dihydroxyphenyl)-2-propenoic acid,Caffeic acid,3-(3,4-dihydroxyphenyl)-2-propenoic acid, 331-39-5, 3,4-Dihydroxybenzeneacrylic acid
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Similarities

Being able to identify molecules that are similar to the one we study can allow to infer some of its properties. There are several ways of measuring the similarity between molecules, by their structure, effects, pharmacological interactions etc. In the following, you can find similar molecules according to various criterions and tools that we developed. To understand the limitations of these comparisons, it is crucial to always refer to the methodology that was used to measure those similarities. Please note: This information is provided solely for informational purposes and should not be interpreted as medical advice.

To measure structural similarity, we use the Mol2vec method, which is a neural network that processes molecules and transform them into points in spaces, such that molecules with chemically related substructures are transformed into points that are close in space.

Molecule properties

Using the KGPT Deep Learning model, we predict several property of the molecule. Predictions are grouped by the dataset that was used to get those prediction. Along with each prediction, we provide a plot that shows the distribution of predicted values on the train/test/val dataset. This gives an estimate of the reliability of the model.

Description: A dataset focused on predicting the inhibitory effects of molecules on the enzyme beta-secretase 1 (BACE1). BACE1 inhibition is a potential target for Alzheimer's disease treatment.
Class
TrainValTest
2.88-3.70-1.36
Description: A dataset providing insights on the ability of molecules to penetrate the blood-brain barrier. Crucial for understanding the potential of molecules as central nervous system drugs.
p_np
TrainValTest
-2.24-3.290.40
Description: This dataset deals with the FDA approval status and clinical trial toxicity of molecules. Important for understanding the safety and regulatory status of compounds.
CT_TOX
TrainValTest
-0.49-0.78-0.91
FDA_APPROVED
TrainValTest
0.53-1.27-0.50
Description: A dataset that predicts the solubility of molecules in water. Solubility is an essential property influencing bioavailability and the potential formulation of a drug.
logSolubilitylog(mol/L)
0.81
TrainValTest
Description: This dataset is centered on predicting the free energy when a molecule is dissolved in water. The energy changes can affect molecular interactions in biological systems.
freesolvkcal/mol
-2.54
TrainValTest
Description: A dataset predicting the lipophilicity of molecules. Lipophilicity is a crucial factor affecting the distribution, metabolism, and excretion of drugs in the body.
lipoAlogP
-2.96
TrainValTest
Description: This dataset gives insights into the metabolic stability of molecules. High metabolic stability often results in a longer half-life, influencing drug dosage and frequency.
low
TrainValTest
-0.17-3.50-2.88
high
TrainValTest
0.72-3.55-0.49
27 entries
12 entries
617 entries

Advanced insights

In the following we provide more advanced analysis about the interactions of a molecule with the human metabolism, docking sites etc.

Interaction of this molecule with metabolism

We use a Deep Learning model to predict the interactions of this molecule with metabolism. Refer to the source to understand the methodology.

Reactions that metabolize this molecule
Catechol O-methylation BTMR0212
Enzymes: 2.1.1.6
Reagents
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Ferulic acid

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Ferulic Acid

Catechol O-methylation BTMR0213
Enzymes: 2.1.1.6
Reagents
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isoferulic acid

Glycine conjugation BTMR1325
Enzymes: 2.3.1.13
Reagents

Metabolite: InChI=1S/C11H11...

Aromatic OH-glucuronidation BTMR0166
Enzymes: 2.4.1.17
Reagents

Metabolite: InChI=1S/C15H16...

Aromatic OH-glucuronidation BTMR0166
Enzymes: 2.4.1.17
Reagents

Metabolite: InChI=1S/C15H16...

O-Glucuronidation of aliphatic acid BTMR0167
Enzymes: 2.4.1.17
Reagents

Metabolite: InChI=1S/C15H16...

4-OH-Sulfation of hydroxycinnamate BTMR1289
Enzymes: 2.8.2.1
Reagents

Metabolite: InChI=1S/C9H8O7...

Sulfonation of phenolic compound BTMR1376
Enzymes: 2.8.2.1
Reagents

Metabolite: InChI=1S/C9H8O7...

Sulfonation of phenolic compound BTMR1376
Enzymes: 2.8.2.1
Reagents

Metabolite: InChI=1S/C9H8O7...

Carnitine conjugation BTMR1324
Enzymes: 2.3.1.7
Reagents

Metabolite: InChI=1S/C16H21...

Epoxidation of alkene BTMR0109
Reagents

Metabolite: InChI=1S/C9H8O5...

Reduction of alpha,beta-unsaturated carbon-carbon double bond adjacent to electron withdrawing group BTMR1209
Enzymes: 1.6.99.1
Reagents

Metabolite: InChI=1S/C9H10O...

Decarboxylation of phenolic acid BTMR1287
Enzymes: Bacterial phenolic acid decarboxylase (EC 4.1.1.-)
Reagents

InChI=1S/C8H8O2/c1-2...

Decarboxylation of phenolic acid BTMR1287
Enzymes: Bacterial phenolic acid decarboxylase (EC 4.1.1.-)
Reagents
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Formic Acid

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Formic Acid

Dehydroxylation of catechol BTMR0278
Enzymes: Unspecified bacterial dehydroxylase
Reagents

InChI=1S/C9H8O3/c10-...

3'-Dehydroxylation of substituted benzene BTMR1314
Enzymes: Unspecified bacterial dehydroxylase
Reagents
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P-Coumaric Acid

Reactions that metabolism produce from this molecule
Hydrolysis of carboxylic acid ester BTMR0143
Enzymes: 3.1.1.1
Products
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Rosmarinic acid

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ROSMARINIC ACID

Methylenedioxy ring opening BTMR1177
Enzymes: CYP1A2 CYP2D6
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MDCA

O-Dealkylation BTMR0052
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Ferulic acid

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Ferulic Acid

O-Dealkylation BTMR0052
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isoferulic acid